fairSIM, a free, open source ImageJ plugin for SR-SIM reconstructions

February 16, 2017


This page provides an overview of all resources available for fairSIM - Free Analysis and Interactive Reconstruction for Structured Illumination Microscopy.
All resources are hosted on our public github repositorys, most are mirrored on our institute website.


A publication accompanying fairSIM has just been published in Nature Communications (open access):

M. Müller, V. Mönkemöller, S. Hennig, W. Hübner, T. Huser, "Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ", Nature Communications, doi: 10.1038/ncomms10980



All raw data files organized in this repository.

Raw image files:

Parameters, OTFs (can be found here in the repository)

The parameter files and OTFs are not needed to run the reconstruction.
They can be used to via the ”load reconstruction” feature, and to compare approximated to experimentally determined OTFs.